Here are some definitions and discussion of relevant terms that hopefully might help clarify some of the linguistic concepts. I'm sorry for the excessive length, which I'll try to trim down as I organize these thoughts better. Pretty much all of the terms you've brought up refer to phonemic concepts, or theoretical elements of the organization of a language's sound system, rather than to phonetic, directly measurable (or audible) features of language.
Overall, the “syllable” is a vaguely defined concept. Many languages can be analysed such that some sounds are considered syllabic nuclei, such as vowels or syllabic consonants. For example, the English word “chasm” has two syllabic nuclei: the first is the vowel “a”, and the second is the syllabic consonant “m”. Once you’ve determined the syllabic nuclei, a word can then be defined to have exactly as many “syllables” as it has syllabic nuclei. Then, by looking at the patterns of how the other, non-syllabic sounds vary depending on where they are in a word, we can come up with theories of syllabification that assign some or all of the non-syllabic sounds in a word to a particular syllable, as either part of the syllable’s onset (before the syllable nucleus) or its coda (after the syllable nucleus).
The difficulty lies in formulating a theory that clearly assigns every sound to a particular syllable. Sometimes, there are conflicting principles of syllabification, and so different phonologists may have different views on the syllabification of a particular word. Other contentious questions about syllabification: can a single sound simultaneously belong to more than one syllable? Can a word have sounds that are not underlyingly part of any syllable? Do all words in all languages have clearly identifiable syllabic nuclei? If anyone tells you these questions have a simple answer, be skeptical.
A mora is basically a unit of syllabic "weight" used in the analysis of a language, that may or may not constitute a full syllable on its own. A single syllable can have one or more morae. Typically, the onset (first part) of a syllable is weightless, and thus does not contribute any morae to the syllable. A short vowel is considered to be worth one mora, and a long vowel two. Consonants at the end of a syllable may also be considered to contribute a mora. When analysing Japanese, a short vowel is considered to have one mora, a long vowel is considered to have two, and the syllable codas ん and っ (sometimes transcribed /N/ and /Q/), are considered to each have one mora. It's useful to distinguish morae from syllables because some languages, like Japanese, have phonological rules that refer to both.
The use of pitch (also volume and other suprasegmental features like this) above the word level: for example, the use of rising pitch in English questions: the pitch is not associated with any particular word, but with a particular type of statement instead. All languages have some kind of patterns of intonation, but not necessarily the same ones as other languages. "Intonation" is not directly related to "tone" or "stress": non-tonal languages have intonation, and intonation usually doesn't interact with the tone system of a language, but operates on a different level from it.
Specific words can be differentiated only by the pitch or the pattern of pitch changes that occurs when they are spoken. In some languages, tonal patterns apply to words as a whole, and knowing the placement of one particular pitch feature in a word is enough to know what pitch pattern to use for the entire word. Tokyo Japanese has a tone system of this type, where knowing a pitch value and the mora it is located on is enough to predict the pitch pattern of an entire word. The Japanese system is often called a “pitch accent”. Thus, the concept of the "mora" is used to help explain the pattern of pitch or "pitch accent" we see in Japanese words, but the concepts don't have to go together, and not all languages have both.
Other languages with phonemic tone are analysed as having each syllable specified with an independent tone. However, many of these languages analysed as having an independent tone “for each syllable” in theory actually exhibit a phenomenon where tones on adjacent syllables or in the same word can affect each other: this is called “tone sandhi”. Standard Mandarin Chinese is a language analysed with tone at the syllable level and tone sandhi. Not all languages have phonemic pitch, or "tone". English doesn't.
In some languages, including English, some syllables in a word seem more prominent than others. This is “stress”. “Stress” may be realized in different languages with different combinations of measurable phonetic features, such as pitch, length, or vowel quality. The term “stress” is typically used when there is exactly one syllable that can be identified as the most prominent, and every content word has such a syllable.
In many languages, if you know the precise sequence of sounds in a word, you can predict with certainty where the word's stress is. In other languages, the stress cannot always be predicted; there could be two words with the same sequence of sounds but different placements of stress. English falls into the latter category; this kind of unpredictable stress is called “phonemic stress” or “lexical stress”. Spanish is also in this category; although the stress is predictable from the spelling, it can’t be predicted if you only know the sequence of consonant and vowel sounds.
Connections between Stress, Tone, and Vowel Length
Of phomenic stress and phonemic tone, languages can have just one, just the other, both, or neither. Both pitch and stress often interact with vowel length as well; commonly, long vowels can have more types of pitch than short vowels, such as "contour pitches" like falling or rising-falling, and long vowels often attract stress in some way or get shortened in non-stressed syllables.
In many languages that have both phonemic stress and tone, the two interact in some way. This combined system of stress and tone (and perhaps also vowel length) is often called “pitch accent”. This isn’t particularly related to the Japanese “pitch accent”, so I wouldn't attach much importance to the fact that the same term is used for both phenomena. In particular, there are languages that have a typical stress system, with all words having a single most prominent syllable, and that only have a contrast between different pitches for that one stressed syllable. Many Baltic languages have a system like this, which also interacts with vowel length. Lithuanian is an example of a language with this type of "pitch accent".
Timing and Isochrony
The concept of “timing” is usually presented as the idea that fluent speakers of languages will try to evenly space out some linguistically significant feature of their words. Supposedly, a speaker of a “stress-timed” language will adjust the speed at which they speak syllables so that timing between stressed syllables is approximately constant. A speaker of a “syllable-timed” language is supposed to adjust the speed at which they speak so that every syllable is approximately the same length. And a fluent speaker of a “mora-timed” language supposedly adjusts their speech unconsciously so as to have an approxomately even timing between any two successive morae. So, it’s very possible you might have heard someone make the claim that all languages fall into one of these types.
One complication with this view is that other factors besides stress, number of syllables, and syllabic weight can affect how long it takes phonetically to pronounce a syllable on average. In English, both “large” and “bee” are single stressed syllables, but the first has a more complicated syllable structure than the sceond, which tends to make it take longer to pronounce. There are also good theoretical reasons to think of these three classifications as hypothetical extreme points on a spectrum rather than a tripartite division: even though English is supposedly syllable-timed, most analyses of British English also identify a phonemic distinction in vowel length, which would seem to conflict with a rule of isochrony based purely on the position of stress and nothing else.
Despite these issues, there are linguists who believe there is a real phenomenon underlying the idea of isochrony, but as you can see, it is not at all a clear-cut classification.